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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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108 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADAM28
ENSSSCG00000009644
ENSG00000042980
ADAM metallopeptidase domain 28
Tissue enhanced
Detected in all
epididymis:
81.1
urinary bladder:
46.5
ASIC5
ENSSSCG00000008869
ENSG00000256394
Acid sensing ion channel subunit family member 5
Group enriched
Detected in some
pineal gland:
2.4
small intestine:
2.8
testis:
2.0
BTNL2
ENSSSCG00000025071
ENSG00000204290
Butyrophilin like 2
Tissue enriched
Detected in some
small intestine:
46.2
C3orf85
ENSSSCG00000032588
ENSG00000241224
Chromosome 3 open reading frame 85
Group enriched
Detected in some
liver:
7.9
small intestine:
27.8
DNAJB7
ENSSSCG00000034801
ENSG00000172404
DnaJ heat shock protein family (Hsp40) member B7
Group enriched
Detected in many
small intestine:
15.6
testis:
26.4
ERICH4
ENSSSCG00000040022
ENSG00000204978
Glutamate rich 4
Tissue enhanced
Detected in many
kidney:
13.1
small intestine:
14.2
FABP2
ENSSSCG00000037272
ENSG00000145384
Fatty acid-binding protein, intestinal
Tissue enhanced
Detected in all
small intestine:
31.2
FABP6
ENSSSCG00000017037
ENSG00000170231
Gastrotropin
Tissue enriched
Detected in some
small intestine:
511.8
FAM135A
ENSSSCG00000004275
ENSG00000082269
Family with sequence similarity 135 member A
Low tissue specificity
Detected in all
GLP1R
ENSSSCG00000001589
ENSG00000112164
Glucagon-like peptide 1 receptor precursor
Tissue enriched
Detected in many
small intestine:
35.0
HKDC1
ENSSSCG00000010252
ENSG00000156510
Hexokinase domain containing 1
Tissue enhanced
Detected in all
small intestine:
34.6
LINC00483
ENSSSCG00000017556
ENSG00000167117
Long intergenic non-protein coding RNA 483
Tissue enriched
Detected in many
small intestine:
44.9
LRAT
ENSSSCG00000008995
ENSG00000121207
Lecithin retinol acyltransferase
Low tissue specificity
Detected in all
MALRD1
ENSSSCG00000040615
ENSG00000204740
MAM and LDL receptor class A domain containing 1
Group enriched
Detected in many
choroid plexus:
59.1
small intestine:
38.3
MEP1A
ENSSSCG00000001724
ENSG00000112818
Meprin A subunit alpha
Tissue enriched
Detected in single
small intestine:
80.9
MLN
ENSSSCG00000001521
ENSG00000096395
Promotilin precursor
Group enriched
Detected in some
epididymis:
31.1
small intestine:
39.2
na
ENSSSCG00000001447
Butyrophilin, subfamily 1, member precursor
Tissue enriched
Detected in many
small intestine:
40.3
na
ENSSSCG00000006931
Tissue enriched
Detected in some
small intestine:
56.1
na
ENSSSCG00000006932
ENSG00000016602
Group enriched
Detected in some
large intestine:
64.1
small intestine:
113.7
na
ENSSSCG00000009495
Tissue enhanced
Detected in some
dura mater:
9.6
kidney:
3.8
small intestine:
5.3
testis:
3.9
na
ENSSSCG00000009496
Tissue enhanced
Detected in some
large intestine:
3.5
small intestine:
13.4
thyroid gland:
3.8
na
ENSSSCG00000009497
Tissue enhanced
Detected in some
dura mater:
4.7
lymphoid tissue:
5.0
small intestine:
11.7
na
ENSSSCG00000009499
Tissue enhanced
Detected in some
lymphoid tissue:
3.3
small intestine:
6.6
thyroid gland:
3.8
na
ENSSSCG00000010820
Group enriched
Detected in some
large intestine:
5.2
small intestine:
19.3
na
ENSSSCG00000013593
ENSG00000131142
C-C motif chemokine 25
Group enriched
Detected in some
lymphoid tissue:
49.8
small intestine:
88.7
na
ENSSSCG00000014861
ENSG00000166391
2-acylglycerol O-acyltransferase 2
Tissue enhanced
Detected in all
skin:
34.5
small intestine:
16.9
na
ENSSSCG00000014938
ENSG00000118181
Low tissue specificity
Detected in some
na
ENSSSCG00000015469
ENSG00000180658,ENSG00000243896
Tissue enhanced
Detected in some
small intestine:
3.3
thyroid gland:
2.5
na
ENSSSCG00000015691
ENSG00000115850
Group enriched
Detected in some
small intestine:
19.6
testis:
5.6
na
ENSSSCG00000015916
Tissue enriched
Detected in some
small intestine:
11.3
na
ENSSSCG00000017843
Tissue enhanced
Detected in some
cornea:
4.7
small intestine:
20.6
stomach:
6.7
na
ENSSSCG00000017849
Tissue enhanced
Detected in many
fallopian tube:
11.2
skin:
12.1
small intestine:
9.8
na
ENSSSCG00000022261
ENSG00000204616
E3 ubiquitin-protein ligase TRIM31
Tissue enriched
Detected in some
small intestine:
59.7
na
ENSSSCG00000022720
Tissue enhanced
Detected in many
fallopian tube:
12.1
small intestine:
9.5
na
ENSSSCG00000023546
Tissue enriched
Detected in many
small intestine:
51.2
na
ENSSSCG00000023598
Tissue enhanced
Detected in some
lymphoid tissue:
5.0
small intestine:
13.9
na
ENSSSCG00000027041
Tissue enhanced
Detected in some
lymphoid tissue:
1.3
ovary:
1.1
small intestine:
1.0
na
ENSSSCG00000027851
Tissue enhanced
Detected in some
epididymis:
1.5
lymphoid tissue:
2.1
small intestine:
4.1
na
ENSSSCG00000027921
Tissue enriched
Detected in many
small intestine:
45.7
na
ENSSSCG00000030013
ENSG00000115850
Tissue enriched
Detected in some
small intestine:
29.7
na
ENSSSCG00000030874
Tissue enriched
Detected in single
small intestine:
63.4
na
ENSSSCG00000031137
Group enriched
Detected in some
male glands:
4.6
small intestine:
6.1
na
ENSSSCG00000031160
Not detected
Not detected
na
ENSSSCG00000031177
Regenerating islet-derived protein 3-gamma precursor
Tissue enriched
Detected in some
small intestine:
14.5
na
ENSSSCG00000031553
Tissue enriched
Detected in some
small intestine:
36.1
na
ENSSSCG00000031559
Tissue enhanced
Detected in single
small intestine:
1.1
na
ENSSSCG00000031663
Tissue enhanced
Detected in some
cornea:
4.0
male glands:
4.0
small intestine:
13.4
na
ENSSSCG00000031992
Tissue enriched
Detected in many
small intestine:
52.7
na
ENSSSCG00000032158
Tissue enriched
Detected in some
small intestine:
14.2
na
ENSSSCG00000032161
Group enriched
Detected in many
cornea:
26.2
male glands:
10.7
small intestine:
34.7
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